Hardware acceleration of computational genomics

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Project Description

We're working on a number of projects related to hardware acceleration of computationally challenging tasks in genomics research and looking for highly motivated students with some background in GPU/FPGA programming or high-performance computing to join. Please contact me via email for details on the latest projects. 

SARS-CoV-2 Phylogenetics

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Project Description

We’re currently working with an international group of collaborators to perform phylogenetic
analysis of millions of SARS-CoV-2 sequences for viral epidemiology and evolutionary biology applications. Current projects include phylogenetic placement in real time, tree structure optimization, recombination inference, etc. Contact me via email for the latest details.