Single cell transcriptomics and epigenetics of the opioid use disorder and HIV syndemic in the human brain

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Project Description

As part of the NIH NIDA SCORCH consortium, we will dissect the dysregulated molecular circuitry in the brains of individuals with opioid use disorder and/or HIV infection. This project aims to identify genes that contribute to opioid use disorder and HIV-associated neurocognitive disorders. These approaches could lead to novel gene therapies to control and perhaps reverse the relentless disease state. We are in the process of generating snRNA-seq and snATAC-seq profiles from more than 300 patient samples across 3 different brain regions.

Ethan Armand

First Name
Ethan
Last Name
Armand
Student Status
Graduate Student
Email
earmand@ucsd.edu
Major
Bioinformatics and Systems Biology
Advisor
Co-Advisor
Completed Degrees

B.S., Cognitive Science, University of California San Diego

BISB Training Grant
No
Special Funding or Awards

2023 Daniel T. O’Connor Genetics Scholar
2021 Jacobs School of Engineering Powell Fellow

Research Focus
Gene regulation, epigenome, deep learning

Sarah Wright

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First Name
Sarah
Last Name
Wright
Student Status
Graduate Student
Email
snwright@ucsd.edu
Major
Bioinformatics and Systems Biology
Advisor
Completed Degrees

M.Eng. Biomedical Engineering, Massachusetts Institute of Technology, 2016
B.S. Biological Engineering, Massachusetts Institute of Technology, 2017

BISB Training Grant
No
Research Focus
Network genetics

Jihoon Kim

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First Name
Jihoon
Last Name
Kim
Student Status
Alumni
Major
Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Co-Advisor
BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Spring
Thesis Title
Data Standardization, Federated Learning, and Informed Consent Algorithms and Tools to Honor Patient Privacy and Preferences in Clinical Research