Longitudinal metabolic analysis of Diabetes Prevention Program (DPP) participants to identify patient subgroups with differential micro and macrovascular complication risk

Project Type
Last Updated
Project Description

Type 2 Diabetes (T2D) complications cause morbidity and mortality, but occur heterogeneously among those at risk and thus are difficult to predict. Previous studies to identify individuals at risk of diabetic complications focus on single timepoint data for a few features and do not examine phenotypic variables over time. This project will analyze multiple longitudinal clinical phenotypes to identify clusters of individuals at risk of diabetic complications.

Pre-adipocyte cell fate reprogramming

Project Type
Last Updated
Project Description

Adipose tissue secretes cytokines to regulate essential functions, but comprehensive study is prevented by difficult-to-access depots such as visceral epicardial adipose tissue and differences between donor sources and methods to generate cell lines. This project will start with an isogenic population of cultured human preadipocytes and reprogram them to specific types of adipocytes using a combinatorial process analogous to that of induced pluripotent stem cells. This project includes working with single cell (sc)-RNAseq and sc-ATACseq datasets using XGBoost and other models.

aiDose: A foundation model for clinical decision support in hospitalized patients with diabetes

Last Updated
Project Description

Hospitalized patients with diabetes require daily management by a team of clinicians that must make daily insulin dosing decisions. While each decision is usually made according to standard algorithms, hundreds of such decisions must be made daily by a few providers leading to errors and burnout; this project will address this clinical burden by developing aiDose, a foundation model for inpatient diabetes management that can incorporate medical records and previous clinician notes to provide decision support for inpatient diabetes services.

Longitudinal metabolic analysis of Diabetes Prevention Program (DPP) participants to identify patient subgroups with differential micro and macrovascular complication risk

Last Updated
Project Description

Type 2 Diabetes (T2D) complications cause morbidity and mortality, but occur heterogeneously among those at risk and thus are difficult to predict. Previous studies to identify individuals at risk of diabetic complications focus on single timepoint data for a few features and do not examine phenotypic variables over time. This project will analyze multiple longitudinal clinical phenotypes to identify clusters of individuals at risk of diabetic complications.

Pre-adipocyte cell fate reprogramming

Last Updated
Project Description

Adipose tissue secretes cytokines to regulate essential functions, but comprehensive study is prevented by difficult-to-access depots such as visceral epicardial adipose tissue and differences between donor sources and methods to generate cell lines. This project will start with an isogenic population of cultured human preadipocytes and reprogram them to specific types of adipocytes using a combinatorial process analogous to that of induced pluripotent stem cells. This project includes working with single cell (sc)-RNAseq and sc-ATACseq datasets using XGBoost and other models.