Department News

Rachel Marty awarded NSF GROW Fellowship

July 20, 2016

Rachel Marty has been awarded an NSF GROW fellowship to conduct research in cancer immunology at the University of Lausanne in Switzerland. The project entails computationally categorizing immune regions of the genome, such as HLA and KIR, and deciphering their roles in cancer. The NSF GROW (Graduate Resarch Opportunities Worldwide) Fellowship provides opportunities for students to engage in international research collaborations abroad. Rachel Marty received a B.S. in Computer Science with a specialization in Bioinformatics at UCSD and is currently in the Ph.D. program in Bioinformatics and Systems Biology at UCSD.

Olga Botvinnik

May 25, 2016

Olga Botvinnik, a Ph.D. student in the Bioinformatics and Systems Biology graduate program, is featured in a story about women in the open source software community.

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NSF Graduate Research Fellowships awarded to Rachel Marty

June 19, 2015

The National Science Foundation has awarded Graduate Research Fellowships to Ph.D. student Rachel Marty in the graduate Bioinformatics and Systems Biology program and to Max Shen in the undergraduate Bioinformatics program.

Trey Ideker named AAAS Fellow

November 26, 2014

Trey Ideker has been selected as a Fellow of the American Association for the Advancement of Science.

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Olga Botvinnik awarded 2014 John Hunter Technology Fellowship

July 7, 2014

Olga Botvinnik, a Ph.D. student in the Bioinformatics and Systems Biology graduate program, has been awarded the 2014 John Hunter Fellowship. The focus of her Fellowship will be to create open source analysis software for the single-cell and biology communities, and to pioneer data, code sharing, and computational reproducibility within the single-cell and RNA biology communities.

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NSF Graduate Research Fellowships awarded to Leen Jamal and Jeffrey Yuan

April 1, 2014

The National Science Foundation has awarded Graduate Research Fellowships to Ph.D. students Leen Jamal and Jeffrey Yuan in the graduate Bioinformatics and Systems Biology program, and to students Robin Betz and Christopher Probert in the undergraduate Bioinformatics program.

Simple Math Sheds New Light on a Long-Studied Biological Process

August 7, 2013

One of the most basic and intensively studied processes in biology—one which has been detailed in biology textbooks for decades—has gained a new level of understanding, thanks to the application of simple math to a problem that scientists never before thought could benefit from mathematics.

The scientists who made the discovery, published in this week's advance online publication of Nature, found that the process bacteria use to quickly adapt to metabolize preferred energy sources such as glucose—a process called “catabolite repression”—is controlled not just by glucose, as had long been known and taught, but just as much by other essential nutrients, such as nitrogen and sulfur, available to bacteria in their growth medium.

“This is one of the most studied processes in molecular biology; it’s in every textbook,” says Terence Hwa, a professor of physics and biology at UC San Diego, who headed the team of scientists. “We showed that this process doesn’t work the way most people thought it did for the past several decades, and its purpose is different from what had generally been assumed.”

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UC San Diego Receives $1.15 Million NSF Grant for Biology ‘Boot Camps’

July 31, 2013

A biology and physics professor at UC San Diego has received a $1.15 million grant from the National Science Foundation to establish a series of annual “boot camps” that will educate San Diego-area high school and college students about an emerging field at the intersection of physics and biology called “quantitative biology.”

"Quantitative biology is more than adding numbers to what biologists already know,” says Suckjoon Jun, an assistant professor of physics and molecular biology, who received the five-year Faculty Early Career Development (CAREER) grant, awarded by the foundation to promising young scholar-researchers, and will work with a biology professor at San Diego State University to start the first of the boot camps next summer. “The power of the approach is to bring quantitative rigor from physical sciences to identify and solve important and interesting problems in biology.”

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Two Young UC San Diego Faculty Members Named Pew Scholars

June 13, 2013

Two early-career scientists at UC San Diego are among 22 of the nation’s most enterprising researchers named Pew Scholars in the Biomedical Sciences by The Pew Charitable Trusts.

These scholars will each receive $240,000 over the next four years to pursue research projects without restriction that are focused on solving some of the nation’s most perplexing health problems—including diabetes, autism, Parkinson’s disease and cancer.

Andrew Huberman, an assistant professor of neurosciences, neurobiology and ophthalmology, and Suckjoon Jun, an assistant professor of physics and molecular biology, join a prestigious community of Nobel laureates, MacArthur Fellows, Albert Lasker Basic Medical Research Award winners and hundreds of other pioneers who earned Pew grants at the start of their careers.

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Lily Xu - 2013 ASA Fellow

June 6, 2013

The American Statistical Association (ASA) announced that Professor  href="">Lily Xu is being honored as a 2013 ASA Fellow. Honorees are recognized for their outstanding professional contributions to and leadership in the field of statistical science.