Pratibha Jagannatha

First Name
Pratibha
Last Name
Jagannatha
Student Status
Alumni
Email
pjaganna@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Advisor
Gene Yeo
Co-Advisor
Hannah Carter
Completed Degrees

B.S. Biomolecular Engineering

BISB Training Grant
No
Special Funding or Awards

2019-21 Trainee on NIH Training Grant in Bioinformatics

ARCS Scholar

Research Focus
Transcriptomics
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Advancing Methods and Characterization of mRNA Isoform RNA-protein Interactions and Translation Profiling

Hsuan-lin Her

First Name
Hsuan-Lin
Last Name
Her
Student Status
Alumni
Email
hsher@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Advisor
Gene Yeo
Co-Advisor
Terry Gaasterland
Completed Degrees

M.D., Taipei Medical University, 2019

BISB Training Grant
No
Special Funding or Awards

J Yang Foundation Fellowship

Research Focus
RNA-binding protein function
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Winter
Thesis Title
Integrative Computational Analysis of RNA-Binding Protein Sites Using Deep Learning and Human Genetic Variation

Xiaomi Du

First Name
Xiaomi
Last Name
Du
Student Status
Graduate Student
Email
xid032@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Completed Degrees

B.S., Biology, Caltech, 2016

BISB Training Grant
No
Special Funding or Awards

2019-20 Trainee on NIH Training Grant in Bioinformatics

Omar Shanta

First Name
Omar
Last Name
Shanta
Student Status
Alumni
Email
oshanta@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Advisor
Jonathan Sebat
Co-Advisor
Joseph Gleeson
Completed Degrees

B.S., Electrical Engineering, University of California, Irvine, 2015
M.S., Electrical and Computer Engineering, University of California, San Diego, 2019

BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Genome-wide association of copy number variants across six major psychiatric disorders reveals genotype-phenotype relationships of rare variants

Bojing Jia

First Name
Bojing
Last Name
Jia
Student Status
Alumni
Email
b2jia@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Advisor
Bing Ren
Co-Advisor
Albert Hsiao
Completed Degrees

B.Sc., Quantitative Biology, McGill University, 2015

BISB Training Grant
No
Special Funding or Awards

2024 Siebel Scholar Award

Research Focus
Spatial transcriptomics, computer vision
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Winter
Thesis Title
Multiplexed genome imaging and analysis

Xingzhao Wen

First Name
Xingzhao
Last Name
Wen
Student Status
Alumni
Email
xzwen@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Bioinformatics and Systems Biology
Advisor
Sheng Zhong
Co-Advisor
Bing Ren
Completed Degrees

B.S., Biomedical Engineering, Southeast University, China, 2018

BISB Training Grant
No
Research Focus
RNA interactome, Genome organization
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Summer
Thesis Title
Interplay Between RNA and Chromatin: From Genome-Wide Mapping to Functional Implications

Tsung-Ting Kuo

Faculty Status
Active
Title
Assistant Professor
Email
tskuo@ucsd.edu
Profile URL
https://profiles.ucsd.edu/tsung-ting.kuo
Track(s)
Biomedical Informatics
Department
Biomedical Informatics
BMI Research Area(s)
Predictive Modeling and Personalized Medicine
Privacy Technology, Data Sharing, and Big Data Analytics
Brief Research Description
Blockchain Technologies, Machine Learning, Natural Language Processing
Lab Description

Dr. Tsung-Ting Kuo is an Assistant Professor of Medicine in University of California San Diego (UCSD) Health Department of Biomedical Informatics (DBMI). He is mainly conducting biomedical, healthcare and genomic studies based on blockchain and predictive modeling. His research focuses on blockchain technologies, machine learning, and natural language processing.

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