Juan Tibocha Bonilla
First Name
Juan
Last Name
Tibocha Bonilla
Student Status
Alumni
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Enhancing the Reconstruction and Application of Models of Metabolism and Gene Expression
Eric Kofman
First Name
Eric
Last Name
Kofman
Student Status
Alumni
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
BISB Training Grant
No
Special Funding or Awards
2019-21 Trainee on NIH Training Grant in Bioinformatics
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Algorithms and Statistical Methods for the Analysis of RNA Editing Data
Pratibha Jagannatha
First Name
Pratibha
Last Name
Jagannatha
Student Status
Alumni
Email
pjaganna@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
Completed Degrees
B.S. Biomolecular Engineering
BISB Training Grant
No
Special Funding or Awards
2019-21 Trainee on NIH Training Grant in Bioinformatics
ARCS Scholar
Research Focus
Transcriptomics
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Advancing Methods and Characterization of mRNA Isoform RNA-protein Interactions and Translation Profiling
Hsuan-lin Her
First Name
Hsuan-Lin
Last Name
Her
Student Status
Alumni
Email
hsher@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
Completed Degrees
M.D., Taipei Medical University, 2019
BISB Training Grant
No
Special Funding or Awards
J Yang Foundation Fellowship
Research Focus
RNA-binding protein function
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Winter
Thesis Title
Integrative Computational Analysis of RNA-Binding Protein Sites Using Deep Learning and Human Genetic Variation
Fatemeh Amrollahi
First Name
Fatemeh
Last Name
Amrollahi
Student Status
Alumni
Major
Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Track(s)
Advisor
Co-Advisor
BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Generalizeable Risk Predictive Deep Learning Models
Ammal Abbasi
First Name
Ammal
Last Name
Abbasi
Student Status
Alumni
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Spring
Thesis Title
Unraveling Mutational and Microbial Patterns in Cancer Genomes
Xiaomi Du
First Name
Xiaomi
Last Name
Du
Student Status
Graduate Student
Email
xid032@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Completed Degrees
B.S., Biology, Caltech, 2016
BISB Training Grant
No
Special Funding or Awards
2019-20 Trainee on NIH Training Grant in Bioinformatics
Omar Shanta
First Name
Omar
Last Name
Shanta
Student Status
Alumni
Email
oshanta@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
Completed Degrees
B.S., Electrical Engineering, University of California, Irvine, 2015
M.S., Electrical and Computer Engineering, University of California, San Diego, 2019
BISB Training Grant
No
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Fall
Thesis Title
Genome-wide association of copy number variants across six major psychiatric disorders reveals genotype-phenotype relationships of rare variants
Bojing Jia
First Name
Bojing
Last Name
Jia
Student Status
Alumni
Email
b2jia@ucsd.edu
Major
Bioinformatics and Systems Biology
Track(s)
Advisor
Co-Advisor
Completed Degrees
B.Sc., Quantitative Biology, McGill University, 2015
BISB Training Grant
No
Special Funding or Awards
2024 Siebel Scholar Award
Research Focus
Spatial transcriptomics, computer vision
Degree Conferred
Ph.D.
Year Graduated
Quarter Graduated
Winter
Thesis Title
Multiplexed genome imaging and analysis