Genome skimming (for ecology)

In this project, we aim to develop cheap methods for evaluating ecology using shallow sequencing. Methods such as genome skimming have the potential to enhance the study of biodiversity, but new algorithms are needed to enable such studies. That's the goal of this effort. Most methods we develop are kmer-based. The work involves both working with real data and simulations. We work with partners from outside academia as well. The work is shared with Prof. Bafna.