Journal Club
The Journal Club is organized by Bioinformatics Graduate Students to keep appraised of the current literature. The Spring 2009 schedule is selected Fridays, 11:30-12:30, in Zweifach library.
| Date | Speaker | Papers |
|---|---|---|
| May 22, 2009 11:30-12:30 Zweifach |
Shawn Yost | T. J. Ley, E. R. Mardis, L. Ding, B. Fulton, M. D. McLellan, K. Chen, D. Dooling, B. H. Dunford-Shore, S. McGrath, M. Hickenbotham, L. Cook, R. Abbott, D. E. Larson, D. C. Koboldt, C. Pohl, S. Smith, A. Hawkins, S. Abbott, D. Locke, L. W. Hillier, T. Miner, L. Fulton, V. Magrini, T. Wylie, J. Glasscock, J. Conyers, N. Sander, X. Shi, J. R. Osborne, P. Minx, D. Gordon, A. Chinwalla, Y. Zhao, R. E. Ries, J. E. Payton, P. Westervelt, M. H. Tomasson, M. Watson, J. Baty, J. Ivanovich, S. Heath, W. D. Shannon, R. Nagarajan, M. J. Walter, D. C. Link, T. A. Graubert, J. F. DiPersio, and R. K. Wilson. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature, 456(7218):66– 72, Nov 2008. [PubMed] [PMC] [Journal] |
| May 8, 2009 11:30-12:30 Zweifach |
Boyko Kakaradov | J. Vlasblom and S. J. Wodak. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs. BMC Bioinformatics, 10:99– 99, 2009. [PubMed] [PMC] [Journal] |
| Apr 24, 2009 11:30-12:30 CSE 4140 |
Marcus Kinsella | G. Kudla, A. W. Murray, D. Tollervey, and J. B. Plotkin. Coding-sequence determinants of gene expression in Escherichia coli. Science, 324(5924):255– 258, Apr 2009. [PubMed] [Journal] |
| Apr 10, 2009 noon-1 CSE 4140 |
Jason Bechtel | S. J. Gould, J. E. Hildreth, and A. M. Booth. The evolution of alloimmunity and the genesis of adaptive immunity. Q Rev Biol, 79(4):359– 382, Dec 2004. [PubMed] [Journal] |
| Mar 6, 2009 noon-1 Zweifach |
Gary Hon | M. Guttman, I. Amit, M. Garber, C. French, M. F. Lin, D. Feldser, M. Huarte, O. Zuk, B. W. Carey, J. P. Cassady, M. N. Cabili, R. Jaenisch, T. S. Mikkelsen, T. Jacks, N. Hacohen, B. E. Bernstein, M. Kellis, A. Regev, J. L. Rinn, and E. S. Lander. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature, 458(7235):223– 227, Mar 2009. [PubMed] [Journal] |
| Feb 20, 2009 noon-1 Zweifach |
Lance Hepler | Y. S. Liu, Y. Fang, and K. Ramani. Using least median of squares for structural superposition of flexible proteins. BMC Bioinformatics, 10:29– 29, 2009. [PubMed] [PMC] [Journal] |
| Feb 6, 2009 noon-1 Zweifach |
Joshua Lerman | F. St-Pierre and D. Endy.
Determination of cell fate selection during phage lambda
infection.
Proc Natl Acad Sci U S A, 105(52):20705–
20710, Dec 2008.
[PubMed]
[Journal]
T. K. Lu and J. J. Collins. Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci U S A, 104(27):11197– 11202, Jul 2007. [PubMed] [PMC] [Journal] |
| Jan 23, 2009 noon-1 PFBH 126 |
Juan Lorenzo Rodriguez-Flores | Genome-Wide Association of Diastolic Blood Pressure over 500,000 SNPs in 2,000 Related Individuals D. Levy, M. G. Larson, E. J. Benjamin, C. Newton-Cheh, T. J. Wang, S. J. Hwang, R. S. Vasan, and G. F. Mitchell. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. BMC Med Genet, 8 Suppl 1, 2007. [PubMed] [PMC] [Journal] Wellcome Trust Case Control Consortium. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature, 447(7145):661– 678, Jun 2007. [PubMed] [Journal] |
| Nov 14, 2008 11-noon PFBH 126 |
Ruben Valas | E. V. Koonin. The cosmological model of eternal inflation and the transition from chance to biological evolution in the history of life. Biol Direct, 2:15– 15, 2007. [PubMed] [PMC] [Journal] |
| Oct 31, 2008 11-noon Fung Auditorium |
Nisha Rajagopal | P. J. Choi, L. Cai, K. Frieda, and X. S. Xie. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science, 322(5900):442– 446, Oct 2008. [PubMed] [Journal] |
| Oct 10, 2008 11-noon PFBH 126 |
Nitin Udpa | A. Marson, S. S. Levine, M. F. Cole, G. M. Frampton, T. Brambrink, S. Johnstone, M. G. Guenther, W. K. Johnston, M. Wernig, J. Newman, J. M. Calabrese, L. M. Dennis, T. L. Volkert, S. Gupta, J. Love, N. Hannett, P. A. Sharp, D. P. Bartel, R. Jaenisch, and R. A. Young. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell, 134(3):521– 533, Aug 2008. [PubMed] [PMC] [Journal] |
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