Frontiers in Bioinformatics and Systems Biology Colloquium
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This weekly seminar series is organized by the UC San Diego Bioinformatics and Systems Biology Graduate Program and the Calit2-based Center for Algorithmic and Systems Biology (CASB).
11"×17" Flyers: Current (Fall 2009) Winter 2009 Fall 2008 Unless otherwise noted, all talks are Thursdays 11-noon in Powell-Focht Bioengineering Hall, Fung Auditorium. |
Fall 2009 schedule (flyer)
| Thursday | Talk |
|---|---|
| Sep 24 | Jonathan V. Sweedler, Ph.D. (University of Illinois) Unraveling the peptides in the brain with new informatic tools and mass spectrometry-based measurements |
| Oct 1 | Johan Paulsson, Ph.D. (Harvard Medical School) Understanding fluctuations in biological systems |
| Oct 8 | Yi-Kuo Yu, Ph.D. (National Center for Biotechnology Information) RAId_deNovo: from generating spectrum-specific score distribution of all possible peptides to combining search results of multiple scoring functions and more |
| Oct 15 | Sergei Ksakovsky Pond, Ph.D. (UCSD) Molecular evolution of RNA viruses |
| Oct 22 | Leor Weinberger, Ph.D. (UCSD) Exploiting Gene Expression Circuitry and Noise for Therapy |
| Oct 29 | Shankar Subramaniam, Ph.D. (UCSD) Systems Biology and Medicine: mechanisms, pathways, models and phenotypes |
| Nov 5 | Lucila Ohno-Machado, MD, Ph.D. (UCSD) What's medical in bio-medical informatics? |
| Nov 12 | Kelly Frazer, Ph.D. (UCSD) Human genetic variation and its contribution to complex traits |
| Nov 19 | Richard Caprioli, Ph.D. (Vanderbilt University) Assessing spatial and temporal proteomics: molecular profiling and imaging of tissues by mass spectrometry |
| Nov 26 | Thanksgiving holiday |
| Dec 3 | Eugene Koonin, Ph.D. (National Center for Biotechnology Information) Evolution systems biology: A foundation for post-modern synthesis? |
Winter 2009 schedule (flyer)
| Thursday | Speaker |
|---|---|
| Jan 8 | Martha Bulyk, Ph.D. (Brigham & Women's Hospital and Harvard Medical School) High-Resolution DNA Binding Specificity Profiles of Transcription Factors and cis-Regulatory Codes in DNA |
| Jan 15 | Douglas Richman, M.D. (UCSD) HIV Escape and Evolution |
| Jan 22 | Eleazar Eskin, Ph.D. (UCLA) Computational Challenges in Discovering the Genetic Basis of Complex Traits in Inbred Mouse Strains |
| Jan 29 | Amy Kiger, Ph.D. (UCSD) Deciphering the Code: Roles and Regulation of Distinct Phosphoinositide Pools in Drosophila |
| Feb 5 | Guillaume Bourque, Ph.D. (Genome Institute of Singapore) Evolution of the Mammalian Transcription Factor Binding Repertoire via Transposable Elements |
| Feb 12 | Vivian Hook, Ph.D. (UCSD) Systems Biology of Neurosecretory Vesicles for Cell-Cell Communication: Proteomics and Genomic Approaches |
| Feb 19 | Jonathan Badger, Ph.D. (J. Craig Venter Institute) Automated Phylogenetic Analysis of Genomic and Metagenomic Data |
| Mar 5 | Gerard Manning, Ph.D. (Salk) Comparative Genomics: Mining a Billion Years of Evolution to Understand Cell Signaling, Human Disease, and the Molecular Diversity of Life |
| Mar 12 | Xiaohui Xie, Ph.D. (UC Irvine) Discovering Regulatory Elements in the Genomes of Human, Plasmodium and Mosquitoes |
Fall 2008 schedule (flyer)
| Thursday | Talk |
|---|---|
| Oct 2 | Tao Jiang, Ph.D (University of California, Riverside) A max-flow based approach to the identification of protein complexes using protein interaction and microarray data |
| Oct 9 | Bing Ren, Ph.D. (UCSD) Global analysis of the cis regulatory elements in the human genome |
| Oct 16 | Mikhail Gelfand, Ph.D. (Institute for Information Transmission Problems, Russian Academy of Sciences) Alternative splicing, a playground of evolution |
| Oct 23 | Alex Hoffmann, Ph.D. (UCSD) A temporal code in inflammatory signaling |
| Oct 30 | Vineet Bafna, Ph.D. (UCSD) Detecting structural variation in genomes Please note change of venue to EBU3b 1202 (CSE Building). |
Nov 13 | Andrei Osterman, Ph.D. (Burnham Institute for Medical Research, La Jolla, California) Genomic reconstruction of metabolic networks in bacteria |
| Vivian Hook, Ph.D. (UCSD) Systems Biology of Neurosecretory Vesicles for Cell-Cell Communication: Proteomics and Genomic Approaches Postponed to Feb. 12, 2009. | |
| Dec 4 | William Murphy, Ph.D. (Texas A & M University) Phylogenomic Analysis of the Mammalian Tree of Life |
| Nov 20 | Christopher Lee, Ph.D. (UCLA) Mapping evolutionary pathways of HIV-1 drug resistance using conditional selection pressure |
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Bioinformatics and Systems Biology Graduate Program
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