Assimilating genome-scale metabolic reconstructions with modelBorgifier.

TitleAssimilating genome-scale metabolic reconstructions with modelBorgifier.
Publication TypeJournal Article
Year of Publication2014
AuthorsSauls JT, Buescher JM
JournalBioinformatics
Date Published2014 Jan 13
ISSN1367-4811
Abstract

MOTIVATION: Genome-scale reconstructions and models, as collections of genomic and metabolic information, provide a useful means to compare organisms. Comparison requires that models are similarly notated to pair shared components. RESULT: Matching and comparison of genome-scale reconstructions and models are facilitated by modelBorgifier. It reconciles models in light of different annotation schemes, allowing diverse models to become useful for synchronous investigation.Availability and implementation: The modelBorgifier toolbox is freely available at http://www.brain-biotech.de/downloads/modelBorgifier.zip. CONTACT: jrb [at] brain-biotech.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

DOI10.1093/bioinformatics/btt747
PubMed URLhttp://www.ncbi.nlm.nih.gov/pubmed/24371155?dopt=Abstract
Alternate JournalBioinformatics
PubMed ID24371155