Assimilating genome-scale metabolic reconstructions with modelBorgifier.
Title | Assimilating genome-scale metabolic reconstructions with modelBorgifier. |
Publication Type | Journal Article |
Year of Publication | 2014 |
Authors | Sauls JT, Buescher JM |
Journal | Bioinformatics |
Date Published | 2014 Jan 13 |
ISSN | 1367-4811 |
Abstract | MOTIVATION: Genome-scale reconstructions and models, as collections of genomic and metabolic information, provide a useful means to compare organisms. Comparison requires that models are similarly notated to pair shared components. RESULT: Matching and comparison of genome-scale reconstructions and models are facilitated by modelBorgifier. It reconciles models in light of different annotation schemes, allowing diverse models to become useful for synchronous investigation.Availability and implementation: The modelBorgifier toolbox is freely available at http://www.brain-biotech.de/downloads/modelBorgifier.zip. CONTACT: jrb [at] brain-biotech.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
DOI | 10.1093/bioinformatics/btt747 |
PubMed URL | http://www.ncbi.nlm.nih.gov/pubmed/24371155?dopt=Abstract |
Alternate Journal | Bioinformatics |
PubMed ID | 24371155 |