Alumni
The UC San Diego Libraries provide access to official copies of all UC San Diego dissertations. Search the UC San Diego Libraries Catalog for UC San Diego Bioinformatics dissertations.
Fatemeh Amrollahi
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Generalizeable Risk Predictive Deep Learning Models Abstract: Link Advisor(s): Shamim Nemati , Gabriel Wardi
Email: ochapman@ucsd.edu
Owen Chapman
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Inter- and intratumoral heterogeneity of circular extrachromosomal DNA in medulloblastoma and other pediatric cancers Abstract: Link Advisor(s): Jill Mesirov , Bing Ren
Jihoon Kim
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Data Standardization, Federated Learning, and Informed Consent Algorithms and Tools to Honor Patient Privacy and Preferences in Clinical Research Abstract: Link Advisor(s): Lucila Ohno-Machado , Tsung-Ting Kuo
Email: f5yuan@ucsd.edu
Nancy Yuan
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Using Machine Learning to Elucidate Disease Heterogeneity and Improve Prognostication in Patients with COPD Abstract: Link Advisor(s): Terry Gaasterland , Tsung-Ting Kuo
Andrea Castro
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Determinants for Effective Neoantigen Based Anti-Tumor Immune Response Abstract: Link Advisor(s): Hannah Carter , Ludmil Alexandrov
Nathaniel Delos Santos
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Score-based Transcription Factor Motif Enrichment Strategies for Analysis of Transcriptional Regulation of Immune Response Abstract: Link Advisor(s): Christopher Benner , Melissa Gymrek
Kevin Blansit
Degree Conferred: Ph.D. Bioinformatics and Systems Biology Thesis: Advancing Cardiovascular MRI Acquisition Through Deep Convolutional Neural Network-Based Localization Abstract: Link Advisor(s): Albert Hsiao
Argus Athanas-Crannell
Degree Conferred: Ph.D. Bioinformatics and Systems Biology Thesis: Leveraging Longitudinal Data for Predictive Modeling in Clinical and Mental Health Settings Abstract: Link Advisor(s): Nicholas Schork , Lucila Ohno-Machado
Michelle Dow
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Integrative Multi-omics Analysis to Understand Cancer and Anticancer Therapy Abstract: Link Advisor(s): Hannah Carter
Yingxiang Huang
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Preservation of Patient Level Privacy : Federated Classification and Calibration Models Abstract: Link Advisor(s): Lucila Ohno-Machado
Margaret Donovan
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Understanding the cellular heterogeneity in fetal-like and adult tissues to study cell-type-specific functional genetic variation Abstract: Link Advisor(s): Kelly Frazer
Jing Zhang
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Supporting Diabetes Patient Decisional Needs Through Online Health Communities Abstract: Link Advisor(s): Vineet Bafna , Michael Hogarth
Stephanie Feudjio Feupe
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Deep Characterization of the Contribution of Short Tandem Repeats Across Tissues Abstract: Link Advisor(s): Melissa Gymrek , Vineet Bafna
Kemal Eren
Degree Conferred: Ph.D. Bioinformatics and Systems Biology Thesis: Understanding the evolution of HIV-1 Env through computational analysis and visualization of long-read amplicon sequences Abstract: Link Advisor(s): Joel Wertheim , Siavash Mirarab
Email: w2wei@ucsd.edu
Wei Wei
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics Thesis: Information Retrieval in Biomedical Research: From Articles to DatasetsAbstract: Link Advisor(s): Lucila Ohno-Machado , Xiaoqian Jiang
Email: edlevy@ucsd.edu